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Except you have a false equivalence, we don't have sacred sites that are left undisturbed so as to keep the forest spirits happy and the scientists who go there are not communing with anything. Your parable of the sacred site functioning as an ecological reservoir doesn't change the fact that the local people's reason for leaving the area alone was wrong unless it was specifically understood that it was a reservoir for biodiversity and not some supernatural explaination involving spirits.
It was understood as the sacred source of life. People by and large aren't stupid, just because not everything is coated in a veneer of materialist jargon doesn't mean that interrelations aren't understood. It's a specifically western trait to be so adamant about that distinction, making it a hard delineation people don't want to think across, want to keep separate, and that has something to do with the church retreating to matters of the spirit when science figured out how to explain the material world better than Aristotle. That left a deep scar in our collective psychology and frameworks that's still not even remotely healed.
Consider psychosomatics: It's a discipline all of its own only because people first decided to make a harsh distinction between psyche and body and analyse them independently of each other, the more reductive the better, while in truth it's a deep interrelationship, so now we need a third thing to somehow connect them up again. The same is true about cultures and the places they live: In reality, there's no boundary between the two, so, in our case, you get ecology to somehow connect them up again. The difference between that tribe and us isn't the level of understanding about what's happening, but them not having had the hare-brained idea to see themselves apart from nature.
As to ecologists communing with spirits: If you talk to an animist, yes they very much are. Doesn't matter what the scientists believe they're doing, they're still doing communing with spirits stuff. If you don't think so then you're using another idea of "spirit", that's all.
You insisting they are the same doesn't make it so, an ecologist studying the effects of leaving an area fallow or untouched leads to greater understanding and allows optimisation and application to other areas. Believing the spirits reside in a particular grove does not allow the same and confers no greater understanding because the basis for the practice is incorrect even if the practice itself is sound. But sure, you tell yourself that they do to justify holding onto supernatural explaination despite the fact they have little corelation to reality.
Are you expecting that everyone looking at their fields come up with the whole backlog of western philosophy and science before you allow them to come up with conclusions that are in perfect alignment with their observations? Is it immoral to conclude "things fall down" without simultaneously explaining the movement of the planets?
Then, western science itself is not at all free from supernatural explanations: Because at the end of it, we don't know everything, either. The tribe has an understanding of ecological interrelationship, but preciously little about chemistry and none about quantum physics, while we have preciously little justifications for choices such as disliking Boltzmann brains: Yes, that is a supernatural belief. "The universe dreaming itself, that'd be silly".
So not just is your stance here hypocritical because science itself holds on to supernatural concepts at the edge of our understanding, it's also arrogant as that kind of attitude makes you prone to ignore perfectly correct insight just because it's expressed in a language you don't like.
This is a bit more than just a language difference and shows just how little you really know or understand the differences between supernatural belief and scientific method.
Let's take your example of the observation (not conclusion) that things fall down. Let's say you have your conclusion that the spirits of the earth always pull things down for reasons. I have the conclusion that it's because mass attracts mass due to gravity. Based on the one observation we have the same evidence supporting our theory's so how do we tell them apart? Well if gravity is true we have all kinds of predicted phenomena that should also happen, it also explains why the sun and moon behave as they do. What does the spirits of the earth theory predict... nothing other than things fall down. It's useless for being able to predict other phenomena, it wouldn't even predict things would fall down on other planets as they might not have pull things down spirits and we might not even have asked why the spirits pull things down.
Also, it isn't "western science" which again betrays some kind of nationalistic agenda on your part. It's just science and anyone can do it, it doesnt belong to "western" countries.
As for "supernatural" explaination in western science, you act like every random hypothesis is taken seriously... They aren't, they are picked apart for lack of predictive power, unless a hypothesis makes hard predictions of how the world would work if it were and weren't true it's pointless as it can't be tested or used in any meaningful way. The "boltzman brain" you mention is just a thought experiment and isn't even a serious scientific hypothesis. Scientists as a whole know and accept they don't know everything, otherwise they wouldn't be wasting time doing science would they?
It is you who hears the word "spirit" or "sacred" and goes straight for "those people can't look at things in a scientific way". Meanwhile, elsewhere, people engage in cargo-cult science, coating their magical thinking in technobabble. It's not the language that makes the method.
True. Limited amount of experimental data only allows a limited theory and limited extrapolation. It's not the amount of accumulated data that makes the method, either. You should be more worried if someone watched an apple fall and, with no further information such as centuries of observational data about the movement of planets, concludes "that is why the planets move that way". It would be correct, but it would still be an unjustified leap.
Indeed, science doesn't belong to the west which is precisely why I specified "western science": You can do science without following the western (actually, European) course of first imposing the mind/body dualism etc. That's what I've been trying to tell you all the time. Insisting on that kind of delineation is a particularly western scientific mindset, not a neutral scientific one.
The Boltzmann brain is a heuristic: Every time statistics say that some theory would imply that the most likely reason for why we observe phenomena is that it's all dreamt up by a Boltzmann brain physicists discount that theory. It is, thus, a negative hypothesis, but a hypothesis nontheless and indeed a very serious one. The reason physicists don't like to investigate in those directions is because they think it's unsatisfying. But that's not a scientific measure. Similar things are valid for preferring beautiful over messy maths etc: There's no reason why the fundamental maths of the universe should look beautiful to us as our sense of beauty evolved for completely different reasons.
Why should I be concerned if a leap of intuition led to the conclusion things falling and movement of the planets were caused by the same thing? Doesn't matter how a hypothesis was postulated, what matters is that it can be tested and falsified. That is the important thing, not who cane up with it and why. This is what you are utterly failing to grasp, it doesn't really matter what axioms are assumed or what leap of logic or faith or whatever leads to the hypothesis. Spirits aren't testable of falsifiable. Same issue with boltzmann brains which is why they aren't taken seriously apart from as a foil to show how incomplete our understanding still is.
Because if you accept it without proper argument (and that is what I take "conclusion" to mean) you're not doing science. It would not adhere to the scientific method. I think you should stop trying to lecture me about it.
Indeed, you can take another stone and it will also drop to the ground: Testable, falsifiable. Things, indeed, do fall down. Nature indeed replenishes from the sacred site, that's also testable and falsifiable, they probably did test it at some time and then went "ohfuckohfuck". As one can be directly observed it's physical, as the other can't it's spirits. Further investigation then could conclude that the spirits are actually tiny stuff you need a microscope to see, but the people don't have microscopes also that wouldn't mean that it's not spirits, but that spirits are tiny things you see with a microscope: Why change the term?
This not changing of terms also has precedence in western science btw: "atom" means "undivisible thing" (from Ancient Greek ἄτομος, "I cannot cut"). Does it mean that physicists are not able to tell neutrons, protons and electrons apart?
Nothing, whatsoever, about not even having a concept of materialism precludes one from employing the scientific method. Science is not a set of beliefs or insights, it's a method. And, as you yourself said: Everyone can do that. I'm saying: Just because a tribe didn't do as much science as Europe from Antiquity to Modernity you shouldn't assume that they're talking mumbo-jumbo. They may know shit about quantum mechanics they certainly know a lot about how their environment works.
Another example would be the agriculture of Australian Aborigines, which is so far-out when it comes to techniques that it didn't register as agriculture to the settlers, they thought Aborigines are hunters and gatherers. Sure, they hunt and gather, but within an environment they had shaped such that stuff grew where it was convenient, and animals lived were they were easy to hunt. You don't get to that level of ecological engineering without understanding things and interrelationships, that means they did science, even if your tunnel vision can't recognise it.
Except spirits doesn't mean tiny physical things, it refers to things outside of the physical that cannot be measured or quantified by definition. If spirit was just their word for biodiversity that would be fine but then we'd be talking about sites being biodiverse and not sacred because we'd have established that sacred isn't the correct translation. You keep repeating the same baseless justifications for spiritualistic and religious practices to be treated like some kind of science but they aren't and never will be. They are ritualised behaviours that are successful only because the competing alternatives lead to the collapse of the populations practicing them and would fare less well in alternative environments. We are done here, there is nothing more productive to be gained from you repeating the same misunderstanding of science.